YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Elo68alpha-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLGISFHP FPDQPDERTR NWPLVDSFWT VPVLLSIYLL MVRYAPKWTT RHKPLQLRAP  60
   61 LFCHSLAMVF LNGYICLELY AATRDLDYNF GCQPCRVSFD PHEMRLTKAF WWFYISKILE 120
  121 FADTAFFILR QKWSQLSFLH VYHHSTMFVF CWILIKWMPT GSTYVPAMIN SFVHIIMYGY 180
  181 YALSVLGPRV QRFLWWKRYL TGLQLVQFTI IFFWASQMLV RGCEYGTWIT LSMAIYSLPF 240
  241 LFMFGKFYMQ KYTVSAVGKK PI

Type	Start	End	Confidence
Non-Cytoplasmic	1	24	0.80
Transmembrane Helix	25	42	0.85
Cytoplasmic	43	60	0.78
Transmembrane Helix	61	81	0.87
Non-Cytoplasmic	82	108	0.87
Transmembrane Helix	109	129	0.83
Cytoplasmic	130	137	0.86
Transmembrane Helix	138	158	0.89
Non-Cytoplasmic	159	164	0.76
Transmembrane Helix	165	187	0.84
Cytoplasmic	188	198	0.76
Transmembrane Helix	199	218	0.90
Non-Cytoplasmic	219	225	0.81
Transmembrane Helix	226	248	0.88
Cytoplasmic	249	262	0.95