YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60678233
Protein type:	Transmembrane
Type Confidence:	0.64
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMEITKKPA AKRQNSYRCR PPLEPEPIKQ RHPKSQPTDE APPEPPPNED EMPPPPPRIG  60
   61 SSQAGSSVLI MTPDEIIEAY ERALQEGQEE DGETDGEKKK SGWLNRPISV KSTLRAVRDG 120
  121 LLFVVGGFLR FVRRLDMHGG GTGNNINFVE GLIDFLAGSL GGAAQVYVSQ PLDTVKVKLQ 180
  181 TFPEAYRGML DCFLSTYRKD GVLRGLYAGS VPAVFANVAE NSVLFAAYGG CQKFVAFCVG 240
  241 KETAGDLTTV QNACAGSLAA CFSTLTLCPT ELIKCKLQAL REMKNFVEPA HPQDIRTPWT 300
  301 LTRYIWRTEG IRGFYRGLSS TFLREMPGYF FFFGSYEGTR ELLRRDDQSK DDIGPLRTMI 360
  361 AGAIGGVCLW TSTFSCRRN

Type	Start	End	Confidence
Non-Cytoplasmic	1	357	0.79
Transmembrane Helix	358	374	0.59
Cytoplasmic	375	379	0.41