YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG7912-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	49	0.68
Transmembrane Helix	50	72	0.80
Non-Cytoplasmic	73	80	0.45
Transmembrane Helix	81	105	0.70
Cytoplasmic	106	120	0.34
Transmembrane Helix	121	148	0.78
Non-Cytoplasmic	149	150	0.22
Transmembrane Helix	151	171	0.74
Cytoplasmic	172	172	0.23
Transmembrane Helix	173	194	0.69
Non-Cytoplasmic	195	202	0.39
Transmembrane Helix	203	221	0.80
Cytoplasmic	222	234	0.52
Transmembrane Helix	235	254	0.91
Non-Cytoplasmic	255	294	0.57
Transmembrane Helix	295	318	0.73
Cytoplasmic	319	333	0.58
Transmembrane Helix	334	356	0.72
Non-Cytoplasmic	357	376	0.33
Transmembrane Helix	377	411	0.78
Cytoplasmic	412	429	0.50
Transmembrane Helix	430	459	0.80
Non-Cytoplasmic	460	602	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDNEDDLYR ERLPNVCGAV SSKARSCCSM RSVHRYLPVT DWLPKYQLNF LAMDVVAGLT  60
   61 VGLTAVPQAI AYGAVANLPP AYGLYSAFMG GFVYILLGTC KDITVGPTAI MALMVQPYVD 120
  121 GNPAYAVLIC FLSGCIITLM GLLNLGVLMR FISVPVTTGF TMAAALTIAT GQVNSLFGIS 180
  181 SSASGFLNSW IYFFGHITQT RRNDAILGCC TLVLLLLMRQ LKNLTFGFKS VWKYISLARN 240
  241 AVAVLIGILL CYLLKNDGKL PFLVSGSITP GLPPFKLPPF HTEDPETGET ISFGGMVSNV 300
  301 GTALVSIPLL SILESIAVAK AFSKGKIVDA SQEMIALGVS NILSSFFSSM PITGSFTRTA 360
  361 INNASGVKTP LGGAVTGALV LMTLAFLTTT FAYIPKATLA AIIIAAMFFM VEYETIGEIW 420
  421 RAKKRDMLPF LVTVLTCVFW TLEYGMVVGI VFNALFLLYK SMKPQFFLTT EKFNGIEVTM 480
  481 ADLKGSVDYA AAEYLKMSLV SHVTQRNSEG SAPTTLVVIK GHEIASIDTT VALNLKSLRE 540
  541 DLALLKCDMI CWNWSIPAAG VICRMDRKLR SMFKFSKSFP DLMQTIADAE AADSCIAVDL 600
  601 SQ