YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60677921
Protein type:	Transmembrane
Type Confidence:	0.80
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METAVVGIHF VVTDQHFDNG KLKLRCSAQL HDVYWKTTEK IILETDLFPK HGNGANGNHV  60
   61 NPDDFYDQYA LHEDHLHNKK NSYLTQLQGE EDDGTEGGLG DGGAAWRGAG SSSSRLSPSS 120
  121 SQSCWMVGGS LMAVLSWTLA RQLVSPLQAM MTKTGGATCN MSGRCASRRT RAHGMRVSAT 180
  181 KQKQKQRQMQ QEHRKSCLRV SKSSWKGRGY VCGCGFGRIN SRCIRQLT

Type	Start	End	Confidence
Non-Cytoplasmic	1	122	0.58
Transmembrane Helix	123	144	0.69
Cytoplasmic	145	228	0.44