YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60677891
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.64
Transmembrane Helix	19	38	0.96
Non-Cytoplasmic	39	60	0.62
Transmembrane Helix	61	83	0.88
Cytoplasmic	84	94	0.58
Transmembrane Helix	95	117	0.91
Non-Cytoplasmic	118	192	0.66
Transmembrane Helix	193	213	0.81
Cytoplasmic	214	232	0.66
Transmembrane Helix	233	255	0.85
Non-Cytoplasmic	256	268	0.70
Transmembrane Helix	269	293	0.90
Cytoplasmic	294	304	0.66
Transmembrane Helix	305	326	0.62
Non-Cytoplasmic	327	341	0.51
Transmembrane Helix	342	365	0.54
Cytoplasmic	366	372	0.52
Transmembrane Helix	373	395	0.86
Non-Cytoplasmic	396	479	0.48

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRPKQDGGK FKAFMQENVL TMATVIGVFV GGLIGFIIKN STGEWSKREI MYISFPGEIF  60
   61 LRMLKCLIVP LLVSSITSAI GGLDLSMSSK IATRAITYYF VTTISAVILG ICLVTTLRPG 120
  121 QGAKIVETQT ESIDKASKVL TPDTLMDLVR NMFTDNIIQS TMFQHRTEIY ENTSISPAQP 180
  181 MENWEFKSAQ REGSNVLGLV MFSVILGTTI GRMREKGQLL QDFFTTLSEA MMTITSWVIW 240
  241 ISPLGVAFLI AAKIVEMESI AATIQSLGWY FITVMIGLFL HGFGTIAVIF FLGTRRLPYR 300
  301 YIAKLSQVLA TAFGTGSSSA TMPLTIKCLD NMGIDPRVTR FVIPVGATIN MDGTALYEAV 360
  361 AALFIAQYRE MSYSFGTIVA VSITATAASI GAAGIPQAGL VTMVMVLDTV GLEPKDVSLI 420
  421 IAVDWLLDRF RTTINVMCDA LGTILVNHLS KNDLASVDRL NAEPHELLEL GPNGHEMKE