YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	drd-PA
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	328	0.99
Transmembrane Helix	329	348	0.91
Cytoplasmic	349	386	0.88
Transmembrane Helix	387	406	0.75
Non-Cytoplasmic	407	434	0.83
Transmembrane Helix	435	454	0.93
Cytoplasmic	455	474	0.88
Transmembrane Helix	475	494	0.95
Non-Cytoplasmic	495	533	0.96
Transmembrane Helix	534	556	0.88
Cytoplasmic	557	562	0.85
Transmembrane Helix	563	582	0.93
Non-Cytoplasmic	583	608	0.95
Transmembrane Helix	609	627	0.89
Cytoplasmic	628	639	0.81
Transmembrane Helix	640	661	0.90
Non-Cytoplasmic	662	672	0.88
Transmembrane Helix	673	694	0.93
Cytoplasmic	695	713	0.76
Transmembrane Helix	714	732	0.76
Non-Cytoplasmic	733	755	0.78
Transmembrane Helix	756	774	0.89
Cytoplasmic	775	827	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRMSHMLAL LLVLIASSQA LEGVVQPTCN LKDNCNLGDN LLAGTNSASD AGDVSADKLE  60
   61 SKIASIFEDK VNYSLKLFAD DATTTILEYQ TANLSQLHAV TPGNYTIHQM EQAEDDDDQV 120
  121 EEDERAYLYN IGKRFLAITQ PFDAARNPDA STLCRRQMHQ FLNALDNFDL WALKMHDSSG 180
  181 KLNSGILNGN INQPGDFDQC LGIQQRMNQD QDAGQDQDGD SIIRGQYCLA YAQPVLPHNS 240
  241 KRLKSFFKLI QSHGPFKSEF NDPGHRVPRY SLINWGLCVP SGCSARDVEY SVAEYLGNQT 300
  301 ASTGITFNVR VEPQMCQVRD QRPWDRNTTW AVRFFLLVLS VAVLSTIYDR STKSQPKQNP 360
  361 WFTAFSLDKN LRWLFSTSSA PGDIEAVHGI RFLNAIMLIF SHKSMAMFFN PYNNRTAMSE 420
  421 SLGQPWTVIG RAASLYTDPF LLFSGMLTSY SLFGRLMKQQ PIRLKNEYIS RLMRIVPPLA 480
  481 ALILFCTYVL PLWGSGPQWN LVVGHHADIC KKNWWRNLLF IHNYFGFSEM CLTHTHHLGI 540
  541 DTELFAVAPL LILALWRWPR RGLFALLLLC TVGTAARYYT TIVNQLSNYI YFGTNIQRLF 600
  601 RTADYMYSFP PHRSTVYIMG ILLGYVLRKY QNARLSSLQL RLGWLVATVC VLASLLGPAP 660
  661 MGDINYVYNS THAAIYAAFA PIAWCLFFSW IVFVSHNGYT NKLTKLFAWR GFQVSTKLSY 720
  721 AIYLTQFPVF FFNVGRRRHI HHYYNFVSII LDTNEFISIF LASVALTVLF DAPFQNLKKL 780
  781 LIKRPTAAKV VKDSKAKAAE SQDATTTTLA SQPSSTALLQ SHHPHSD