YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37591406
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPYPTVEDA SVALGRNLTW FETVWFDYSA TKSNFHVYCH TILVLFLVFS LAPFPLVIVE  60
   61 WTGWFDQFKI QKKVKYSLSD MFQCYKEVMK LFLLVVGTLQ IVSYPSIQMV GIRSGLPLPS 120
  121 LMEIVAQLVV YFLIEDYTNY WIHRWMHCKW GYEKIHRIHH EYTSPIGYAS PYAHWAEILI 180
  181 LGIPTFLGPA IAPGHIMTFW LWISLRQFEA IETHSGYDFP WSVTKLIPFY GGPEYHDYHH 240
  241 YVGGQSQSNF ASVFTYCDYI SYGTDKGYRI HKK

Type	Start	End	Confidence
Cytoplasmic	1	36	0.78
Transmembrane Helix	37	58	0.90
Non-Cytoplasmic	59	87	0.76
Transmembrane Helix	88	107	0.77
Cytoplasmic	108	114	0.57
Transmembrane Helix	115	134	0.68
Non-Cytoplasmic	135	177	0.78
Transmembrane Helix	178	202	0.85
Cytoplasmic	203	273	0.85