YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|61651860, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCDVVNEIEL ARARCENKTA GNVTSGCKGM WDIIACWPSA KIGEHVVIPC PNYFRHFSDQ  60
   61 HEGNLSKTCT ADGWTEMDSL EIAVNCGYNL NGTVDDDSFF RSVKIGYTIG HSVSLISLTT 120
  121 AIAILCIFRK LHCTRNYIHM NLFVSFILKA IAVFVKDAVL YDVVQESDNC STGSVGCKAV 180
  181 IVFFQYCIMA SFFWLLVEGL YIHALLAVSF FSERKYFWCY ILIGWGGPTV FIMAWSFAKA 240
  241 YFNDVGCWDI IENSDPFWWI IKTPILASIL MNFILFICII RILRQKINCP DIGRNESNQY 300
  301 SRLAKSTLLL IPLFGINFII FAFIPENIKT ELRLVFDLIL GSFQGFVVAV LYCFLNGEVQ 360
  361 GEIKRKWRSW HLERFLGPDT KYQHPSMGSN GNNFSTQISM LTRCSPKTRR ASTCQDETSI 420
  421 TV

Type	Start	End	Confidence
Non-Cytoplasmic	1	106	0.84
Transmembrane Helix	107	128	0.88
Cytoplasmic	129	136	0.82
Transmembrane Helix	137	155	0.85
Non-Cytoplasmic	156	181	0.86
Transmembrane Helix	182	205	0.80
Cytoplasmic	206	215	0.83
Transmembrane Helix	216	238	0.92
Non-Cytoplasmic	239	259	0.93
Transmembrane Helix	260	283	0.88
Cytoplasmic	284	302	0.97
Transmembrane Helix	303	324	0.93
Non-Cytoplasmic	325	333	0.89
Transmembrane Helix	334	356	0.87
Cytoplasmic	357	422	0.96