YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60552749
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TKGPSILRRR MCNIAFPDSA WGPTLLSWVA VFLLGTKHME AAVTQSPRNK VTVTGKNVTF  60
   61 NCHQTDNHNY MYWYRQDMGH GLRLIHYSYG SGSFENGDIP EGYKVSRPNQ ENFFLTLESA 120
  121 SPSQTSVYFC ASSRPGQNYD YTFGPGTRLL VIEDLKTVTP PKVSLFEPSE AEIADKQKAT 180
  181 LVCLARGFFP DHVELSWWVN GKEIRNGVST DPQAYKESNN ITYCLSSRLR VSAPFWHNPR 240
  241 NHFRCQVQFY GLTEEDNWSE DSPKPVTQNI SAEAWGRADC GITSASYQQG VLSATILYEI 300
  301 LIGKATLYAV LVSTLVVMAM VKRKSS

Type	Start	End	Confidence
Cytoplasmic	1	19	0.61
Transmembrane Helix	20	36	0.68
Non-Cytoplasmic	37	299	0.96
Transmembrane Helix	300	321	0.68
Cytoplasmic	322	326	0.71