YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MPV17_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALWRAYQRA LAAHPWKVQV LTAGSLMGLG DIISQQLVER RGLQQHQTGR TLTMASLGCG  60
   61 FVGPVVGGWY RVLDHLIPGT TKVNALKKML LDQGGFAPCF LGCFLPLVGV LNGMSAQDNW 120
  121 AKLKRDYPDA LITNYYLWPA VQLANFYLVP LHYRLAVVQC VAVVWNSYLS WKAHQL

Type	Start	End	Confidence
Cytoplasmic	1	15	0.80
Transmembrane Helix	16	34	0.79
Non-Cytoplasmic	35	50	0.70
Transmembrane Helix	51	73	0.89
Cytoplasmic	74	89	0.78
Transmembrane Helix	90	111	0.87
Non-Cytoplasmic	112	149	0.74
Transmembrane Helix	150	169	0.75
Cytoplasmic	170	176	0.80