YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|94368290, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	36	0.49
Transmembrane Helix	37	63	0.74
Cytoplasmic	64	72	0.46
Transmembrane Helix	73	90	0.58
Non-Cytoplasmic	91	98	0.71
Transmembrane Helix	99	122	0.89
Cytoplasmic	123	131	0.74
Transmembrane Helix	132	152	0.75
Non-Cytoplasmic	153	165	0.79
Transmembrane Helix	166	186	0.92
Cytoplasmic	187	206	0.94
Transmembrane Helix	207	230	0.90
Non-Cytoplasmic	231	244	0.84
Transmembrane Helix	245	264	0.91
Cytoplasmic	265	272	0.86
Transmembrane Helix	273	292	0.94
Non-Cytoplasmic	293	313	0.90
Transmembrane Helix	314	334	0.92
Cytoplasmic	335	340	0.86
Transmembrane Helix	341	363	0.88
Non-Cytoplasmic	364	379	0.85
Transmembrane Helix	380	401	0.90
Cytoplasmic	402	410	0.88
Transmembrane Helix	411	432	0.92
Non-Cytoplasmic	433	444	0.77
Transmembrane Helix	445	469	0.82
Cytoplasmic	470	478	0.83
Transmembrane Helix	479	499	0.96
Non-Cytoplasmic	500	518	0.92
Transmembrane Helix	519	540	0.93
Cytoplasmic	541	656	0.99
Transmembrane Helix	657	679	0.94
Non-Cytoplasmic	680	691	0.85
Transmembrane Helix	692	712	0.87
Cytoplasmic	713	868	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSYFSAKNS TLAGDMNATW PASHGFNATG DPPSMSITRL FPALLECFGI VLCGYIAGRA  60
   61 NIITSTQAKG LGNFVSRFAL PALLFKNMVV LNFSNVDWAF LYSVLIGKAS VFFIVCVLTL 120
  121 LVASPESRFS KAGLFPIFAT QSNDFALGYP IVEALYQSTY PEYLQYIYLV APISLMMLNP 180
  181 IGFIFCEIQK SKDTQNASQN KAKIVGLGFL RVLQNPIVFM VFVGIAFNFI LDKKIPVYME 240
  241 NFLDGLANSF SGSALFYLGL TMVGKIRRLK KSAFVVLTLL ITAKLLVLPL LCREMVELLD 300
  301 KGDSVVNHTS LSNYAFLYGV FPVAPGVAIF ATQFNMEVEI ITSGMVISTF VSAPIMYVSA 360
  361 WLLTFPTMDA KPLAYAIQNV SFDISIISLV SLIWSLSILL LSKKYKQLPH MLTANLLIAQ 420
  421 TIVCAGMMIW NFVKEKNFVG QILVFVLLYS SLYSTYLWTG LLAVSLFLLK KRESVQLPVG 480
  481 IIIISGWGIP ALLVGVLLIT GKHNGDSIDS AFFYGKEQMI TTAVTLFCSI LIAGVSLMCM 540
  541 NRTTQAGHYE GFGQSQNHKP VEPGSTAFEE NPAPTNEPEL FPSSIPETSC CSCSLGNGEL 600
  601 RCPSIEPVTN SSASGPMPSS FEKTDHCVSR CDSQSCILAQ EEEQYLQSGD PQLTRHVLLC 660
  661 LLLIIGLFAN LSSCLWWLFN HETGRLYVEL QFFCAVFNFG QGFISFGIFG LDKHLIILPF 720
  721 KRRLEFLWNN KEAAADRESP VSEEIKMTCQ QFVHYHRDLC IRNIVRERRC GAKTSAGTFC 780
  781 GCDLVNWLIE VGLASDRGEA VIYGDRLVQG GVIQHITNEY EFRDEYLFYR FLQKSPEQSP 840
  841 PARTLRDHQE ESYKEIGHSS PPSVSPKT