YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60476796
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.77
Transmembrane Helix	14	34	0.93
Cytoplasmic	35	99	0.86
Transmembrane Helix	100	119	0.92
Non-Cytoplasmic	120	148	0.76
Transmembrane Helix	149	169	0.89
Cytoplasmic	170	188	0.81
Transmembrane Helix	189	214	0.86
Non-Cytoplasmic	215	230	0.76
Transmembrane Helix	231	250	0.77
Cytoplasmic	251	299	0.75
Transmembrane Helix	300	322	0.75
Non-Cytoplasmic	323	328	0.54
Transmembrane Helix	329	351	0.90
Cytoplasmic	352	369	0.57
Transmembrane Helix	370	390	0.91
Non-Cytoplasmic	391	406	0.57
Transmembrane Helix	407	427	0.93
Cytoplasmic	428	452	0.54
Transmembrane Helix	453	479	0.70
Non-Cytoplasmic	480	480	0.28
Transmembrane Helix	481	504	0.74
Cytoplasmic	505	543	0.54
Transmembrane Helix	544	566	0.86
Non-Cytoplasmic	567	574	0.50
Transmembrane Helix	575	596	0.87
Cytoplasmic	597	646	0.61
Transmembrane Helix	647	667	0.66
Non-Cytoplasmic	668	668	0.28
Transmembrane Helix	669	686	0.60
Cytoplasmic	687	743	0.57
Transmembrane Helix	744	767	0.74
Non-Cytoplasmic	768	771	0.51

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVASAFLPEL WTEILVPVCA VIGIAFSLFQ WFIVSRVRVT ADQGASSSSG GSNNGKNGYG  60
   61 DYLIEEEEGL NEQSVVAKCA EIQTAISEGA TSFLFTEYKY VGVFMVFFAA IIFVFLGSVE 120
  121 GFSTKNKPCT YDDTKTCKPA LATAAFSTVA FVLGAVTSVL SGFLGMKIAT YANARTTLEA 180
  181 RKGVGKAFIV AFRSGAVMGF LLAASGLLVL YITINVFKIY YGDDWEGLFE AITGYGLGGS 240
  241 SMALFGRVGG GIYTKAADVG ADLVGKIERN IPEDDPRNPA VIADNVGDNV GDIAGMGSDL 300
  301 FGSYAEASCA ALVVASISSF GINHDFTAML YPLLISSMGI LVCLITTLFA TDFFEIKAVK 360
  361 EIEPALKNQL IISTVIMTVG IAIVSWVGLP SSFTIFNFGT QKVVKNWQLF LCVCVGLWAG 420
  421 LIIGFVTEYY TSNAYSPVQD VADSCRTGAA TNVIFGLALG YKSVIIPIFA IAASIFVSFS 480
  481 FAAMYGVAVA ALGMLSTIAT GLAIDAYGPI SDNAGGIAEM AGMSHRIRER TDALDAAGNT 540
  541 TAAIGKGFAI GSAALVSLAL FGAFVSRAGV HTVDVLTPKV IIGLLVGAML PYWFSAMTMK 600
  601 SVGSAALKMV EEVRRQFNTI PGLMEGTAKP DYATCVKIST DASIKEMIPP GCLVMLTPLI 660
  661 VGFFFGVETL SGVLAGSLVS GVQIAISASN TGGAWDNAKK YIEAGVSEHA KSLGPKGSEP 720
  721 HKAAVIGDTI GDPLKDTSGP SLNILIKLMA VESLVFAPFF ATHGGILFKY L