YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55975988
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.89
Transmembrane Helix	16	38	0.92
Non-Cytoplasmic	39	60	0.81
Transmembrane Helix	61	86	0.87
Cytoplasmic	87	104	0.77
Transmembrane Helix	105	126	0.88
Non-Cytoplasmic	127	149	0.84
Transmembrane Helix	150	172	0.90
Cytoplasmic	173	185	0.91
Transmembrane Helix	186	209	0.91
Non-Cytoplasmic	210	240	0.89
Transmembrane Helix	241	261	0.87
Cytoplasmic	262	269	0.76
Transmembrane Helix	270	292	0.90
Non-Cytoplasmic	293	304	0.87
Transmembrane Helix	305	325	0.91
Cytoplasmic	326	339	0.76
Transmembrane Helix	340	361	0.93
Non-Cytoplasmic	362	376	0.89
Transmembrane Helix	377	399	0.93
Cytoplasmic	400	413	0.88
Transmembrane Helix	414	435	0.90
Non-Cytoplasmic	436	458	0.89
Transmembrane Helix	459	479	0.92
Cytoplasmic	480	541	0.95
Transmembrane Helix	542	560	0.93
Non-Cytoplasmic	561	566	0.75
Transmembrane Helix	567	587	0.92
Cytoplasmic	588	596	0.87
Transmembrane Helix	597	623	0.80
Non-Cytoplasmic	624	814	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNLVRWLFS TNHKDIGTLY FIFGAIAGVM GTCFSVLIRM ELARPGDQIL GGNHQLYNVL  60
   61 ITAHAFLMIF FMVMPAMIGG FGNWFVPILI GAPDMAFPRL NNISFWLLPP SLLLLLSSAL 120
  121 VEVGSGTGWT VYPPLSGITS HSGGAVDLAI FSLHLSGVSS ILGSINFITT IFNMRGPGMT 180
  181 MHRLPLFVWS VLVTAFLLLL SLPVLAGAIT MLLTDRNFNT TFFDPAGGGD PILYQHLFWF 240
  241 FGHPEVYILI LPGFGIISHI VSTFSGKPVF GYLGMVYAMI SIGVLGFLVW AHHMFTVGLD 300
  301 VDTRAYFTAA TMIIAVPTGI KIFSWIATMW GGSIQYKTPM LFAVGFIFLF TIGGLTGIVL 360
  361 ANSGLDIALH DTYYVVAHFH YVLSMGAVFA LFAGFYYWVG KIFGRTYPET LGQIHFWITF 420
  421 FGVNLTFFPM HFLGLSGMPR RIPDYPDAYA GWNALSSSGS YISVVGICCF FVVVTITLSS 480
  481 GNNKRCAPSP WAVEQNSNTL EWMIQSPPAF HTFGELPAIK ETKGNVKKKI GKRSMERNIF 540
  541 HFLTYRGTPL MTVVLADFLV PKSMITGPIL ILFCFFLLTF IFFFHRYGLH KKKNEGLTLL 600
  601 TILYISIYFC IFLFGSFFRI CLFSHVGLDF SSFFSLVLCA GAGQELPDQP TPSSSNIHSV 660
  661 AGPSEIKAEI KFERMDQQDQ IAPIQQDQIA PIQQDQIAPI QRSITTELDR IAEIQKSNYD 720
  721 RSFKNAETHE QQIIIQMKQR TNFSDVEIKV AVENTIDEIR QGPNVYANNA KIKKILTQLS 780
  781 DDAQWEHSSG FRKIESEINY FNNIGRNNGD DGAG