YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60101762
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.75
Transmembrane Helix	19	38	0.49
Non-Cytoplasmic	39	56	0.68
Transmembrane Helix	57	79	0.68
Cytoplasmic	80	148	0.93
Transmembrane Helix	149	171	0.90
Non-Cytoplasmic	172	190	0.82
Transmembrane Helix	191	210	0.82
Cytoplasmic	211	216	0.67
Transmembrane Helix	217	240	0.89
Non-Cytoplasmic	241	263	0.79
Transmembrane Helix	264	284	0.90
Cytoplasmic	285	295	0.61
Transmembrane Helix	296	317	0.86
Non-Cytoplasmic	318	340	0.80
Transmembrane Helix	341	366	0.81
Cytoplasmic	367	390	0.81
Transmembrane Helix	391	411	0.88
Non-Cytoplasmic	412	419	0.77
Transmembrane Helix	420	442	0.91
Cytoplasmic	443	447	0.78
Transmembrane Helix	448	469	0.90
Non-Cytoplasmic	470	475	0.74
Transmembrane Helix	476	496	0.92
Cytoplasmic	497	529	0.82
Transmembrane Helix	530	549	0.50
Non-Cytoplasmic	550	553	0.43
Transmembrane Helix	554	569	0.33
Cytoplasmic	570	771	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLEANNPIK KESWKTVLTL AYQSLGVVYG DLSTSPLYVY KSAFAEDIQH SDSNEEIFGV  60
   61 LSFVFWTLTL IPLLKYVFIV LRADDNGEGG TFALYSLLCR HARVSSLPNC QLADEELSAY 120
  121 KKDDIPSGYK NASSSLKLTL EKHKILHKVL LILALIGCCM VIGDGVLTPA ISVFSAVSGL 180
  181 ELSTAKEQHQ YIELPVACTI LVLLFALQHY GTHRVGFLFA PIVITWLVCI STIGVYNIVY 240
  241 WNPRVYRALS PYYMYKFLKK TQRGGWMSLG GILLCMTGSE AMFADLGHFS QLSIKIAFSF 300
  301 IVYPSLILAY MGQAAYLSVH HSLQSDYRIG FYVSVPEKIR WPVLAIAILA AVVGSQAVIT 360
  361 GTFSIIKQCS ALECFPRVRI IHTSSKRHGQ IYIPEINWTL MLLCLAVTIG FRDTKHLGNA 420
  421 SGLAVITVML VTTCLMSLVI VLCWRKNVLL ALGFTFFFGS IEALYFSASL IKFLEGAWVP 480
  481 VALSFIFLII MYTWHYGTLK KYEYDVQNKV PINWLLDLSP NLGMVRVRGI GVIQTELVSG 540
  541 IPAIFSHFVT NLPAFHQVLV FLCIKSVPVP HVRSKERFLI GRIGPREYRM YRCIARYGYR 600
  601 DNHKDEFEFE KDLVCSIAEF IRSEGENVQE NYDDDDEENL TVVGSFSTTK GVKLSEDDDE 660
  661 MDSAEIVGSS ELQKVNSLEK PKKRVRFVVP ETPKIDYYAH EELQDLMEAR ESGMVFILGH 720
  721 SYVRAKCGSS LIKKIAINYG YDFLRRNSRG PSCALSLPHA STLEVGMVYH V