YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169154903, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSANISSTLQ PALFTYNVPA LVFGILLIIV IICGNVLVCL SVYKEKALKT TTNYFIVSLA  60
   61 VADLMLAVLV LPLFVYAEFQ GGVWSLNVSV CDGLMTMDVM LCTASIFNLC AISVDRFIAV 120
  121 SIPLNYNRKH VDYRQIILLS ATWLLALAVA SPVIFGINNV PQRDPSECKL EDNNYVVYSS 180
  181 VCSFFIPCPI MLMLYFGMFH GLRKWEETRK AKLRNSIQAC RSLQHAAVAA ALPPLGALPA 240
  241 SLPRVIERDL AQSSLEELDD FTQPVCPFPP EYKNSTIQTV AYSDIQYGQK TQRKKRAKIN 300
  301 GRERKAMRVL PVVVGVFLFC WTPFFVVHTT RALCESCHIS SDLMSTVTWL GYVNSALNPI 360
  361 IYTVFNTEFR KFFRGFVPRC CC

Type	Start	End	Confidence
Non-Cytoplasmic	1	19	0.93
Transmembrane Helix	20	43	0.91
Cytoplasmic	44	53	0.89
Transmembrane Helix	54	76	0.94
Non-Cytoplasmic	77	93	0.93
Transmembrane Helix	94	118	0.82
Cytoplasmic	119	135	0.86
Transmembrane Helix	136	156	0.94
Non-Cytoplasmic	157	176	0.93
Transmembrane Helix	177	202	0.82
Cytoplasmic	203	305	0.98
Transmembrane Helix	306	327	0.90
Non-Cytoplasmic	328	347	0.84
Transmembrane Helix	348	366	0.79
Cytoplasmic	367	382	0.80