YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|58618087, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPANLTISTH TTNYNFPALI FGILLIIIII CGNVLVCLSV YTEKALKTTT NYFIVSLAVA  60
   61 DLLLAVLVLP LFVYAEFQDG VWSLNMTVCD GLMTMDVMLC TASIFNLCAI SIDRFIAVSI 120
  121 PLNYNRKHVD QRQIVLLSAT WILALAVASP VMFGINNVPN RDHSECKLED NNYVIYSSVC 180
  181 SFFVPCPIML LLYCGMFRGL RNWEEARKAK LRSNMEACRK LQEAAASLQP LSGLPPPLPP 240
  241 VIEKDITLEE LDQDHYPDPD SPDPVSMLAY PGGGYNQDQN QNRQRKRAKI NGRERKAMRV 300
  301 LPVVVGAFLF CWTPFFVVHT MRALCEDCEI PGSVTSIVTW LGYVNSAINP IIYTVFNTEF 360
  361 RKFFRKFLPT LPGCC

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.96
Transmembrane Helix	18	41	0.92
Cytoplasmic	42	51	0.87
Transmembrane Helix	52	74	0.94
Non-Cytoplasmic	75	91	0.93
Transmembrane Helix	92	116	0.83
Cytoplasmic	117	133	0.90
Transmembrane Helix	134	155	0.92
Non-Cytoplasmic	156	173	0.96
Transmembrane Helix	174	197	0.87
Cytoplasmic	198	296	0.98
Transmembrane Helix	297	318	0.90
Non-Cytoplasmic	319	336	0.86
Transmembrane Helix	337	356	0.89
Cytoplasmic	357	375	0.89