YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60688453
Protein type:	Transmembrane
Type Confidence:	0.62
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FDLVNQNVPI PNKGTTYWCQ MFKIPIFQEK HHVIKVEPII ERGHESLVHH ILLYQCSSNF  60
   61 NDSVLDFGHE CYHPNMPDAF LTCETVIFAW GIGGEGFTYP PHVGLSLGMP PDPRYVLLEV 120
  121 HYDNPARKKG LIDSSGLRFF HTTDTRRYDA GVIEAGLWVS LFHTIPPGMP EFRSEGHCTR 180
  181 ECLEEALGTE KPSGIHVFAV LLHAHLSGKG IRLRHFRKGE EMQLLAYDDD YDFNFQEFQY 240
  241 LREEQTILPG DNLITECRYN TKDRAAMTWG GLSTRNEMCL SYLLYYPRIN LTRCTSIPDI 300
  301 MDQLQFIGVK EIYRPVTTWP FIIKSPKQYR NLSFMDAMNK FKWTKKEGVS FNKLVLSLPV 360
  361 NMRCSKADNA EWSIQGMTAL PPDIKKPYKA EPLVCGTSAS SRLHGVFPLP LLGCSLLLGS 420
  421 MLSAQGL

Type	Start	End	Confidence
Non-Cytoplasmic	1	405	0.80
Transmembrane Helix	406	424	0.57
Cytoplasmic	425	427	0.33