YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|162459789, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPELTGKMA AKAAAAAAAV KPATRAYVTF LAGNGDYWKG VVGLAKGLRK VGSAYPLVVA  60
   61 LLPDVPESHR RILVSQGCIL REIEPVYPPE NQTQFAMAYY VINYSKLRIW EFVEYEKMVY 120
  121 LDADIQVFEN IDELFELEKG YFYAVMDCFC EKTWSHTPQY KIGYCQQCPD KVTWPTTELG 180
  181 PPPPLYFNAG MFAHEPSMAT AKALLDTLRV TPPTPFAEQD FLNMFFRDQY RPIPNVYNLV 240
  241 LPMLWRHPEN VQLEKVKVVH YCAAGSKPWR FTGKEANMDR EDIKSLVNKW WDIYNDESLD 300
  301 FKGLPLSPAD ADADDEVEAV AKKPLRAALA EAGTVKYVTA PSAA

Type	Start	End	Confidence
Signal Peptide	1	26	0.83
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	344	0.99