YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68533839
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVPIPGADL SATLPHHTRC ESGYIGKNCE CQTQGRSSQE LEGNCRKDNS SIVCSGLGDC  60
   61 ICGQCVCHTS DIPNKVIFGQ YCECDNFNCE RYDGQVCGGL KRGSCSCGQC NCKEGFEGSA 120
  121 CQCQRSTTGC LNARLVECSG RGRCQCNRCI CEKGYQPPLC EECPGCPLPC STYVFCAECL 180
  181 KFDKGPFQKN CSVQCANVTL QTVPFKKKPC KERDSEGCWI TYTLQQKDGN AYNIHVDDDR 240
  241 ECVKGPNVAA IIGGTVAGVV LIGVLLLVIW KALTHLTDLN EYRRFEKEKL KSQWNNDNPL 300
  301 FKSATTTVMN PKFAES

Type	Start	End	Confidence
Non-Cytoplasmic	1	248	0.59
Transmembrane Helix	249	273	0.82
Cytoplasmic	274	316	0.52