YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56585160
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AALGGDGLRL LSVSRPERQP ESAALSSPGP GLCCWVSVFS CFSLACSYVG SLYVWKSELP  60
   61 RDHPAVIKRR FTSVLVVSSL SPLCVLLWRE LTGIQPGTSL LTLMGFRLEG IFPAALLPLL 120
  121 LTMILFLGPL MQLCMDCPCD LTDGLKVVLA PRSWARRLTD MRWLRNQVIA PLTEELVFRA 180
  181 CMLPMLAPCT GLGPAVFTCP LFFGVAHFHH IIEQLRFRQS SVGSIFLSAA FQFSYTAVFG 240
  241 AYTAFLFIRT GHLIGPVLCH SFCNYMGFPA VCAALEHPQK WPLLAGYALG VGLFLLLLQP 300
  301 LTDPKLYGSL PLCMLLERTG ASETLLCS

Type	Start	End	Confidence
Non-Cytoplasmic	1	31	0.68
Transmembrane Helix	32	55	0.85
Cytoplasmic	56	70	0.68
Transmembrane Helix	71	91	0.88
Non-Cytoplasmic	92	109	0.62
Transmembrane Helix	110	130	0.87
Cytoplasmic	131	185	0.60
Transmembrane Helix	186	211	0.78
Non-Cytoplasmic	212	221	0.45
Transmembrane Helix	222	248	0.79
Cytoplasmic	249	252	0.38
Transmembrane Helix	253	275	0.75
Non-Cytoplasmic	276	282	0.36
Transmembrane Helix	283	302	0.90
Cytoplasmic	303	328	0.45