YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149034522, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGKENNFPP LPHFLPLKPC FYQDFSDEIP VEHQVLVKRI YRLWMFYCTT LGVNLVACLA  60
   61 WWIAGGAGAN FGLAMLWLVL FTPCSYVCWF RPAYKAFRAD SSFNFMAFFF IFGAQFVLTV 120
  121 IQAIGFSGWG ACGWLATIGF FGTSVGAAVV MLIPAIMFSL SAVVMAITIV KVHRIYRGAG 180
  181 GSLQKAQTEW SAGTWRNPPS REAQFNSFSG NSLPEYPTVP SYSTSGGQWP

Type	Start	End	Confidence
Cytoplasmic	1	42	0.99
Transmembrane Helix	43	64	0.95
Non-Cytoplasmic	65	70	0.83
Transmembrane Helix	71	90	0.94
Cytoplasmic	91	104	0.81
Transmembrane Helix	105	126	0.92
Non-Cytoplasmic	127	144	0.71
Transmembrane Helix	145	169	0.86
Cytoplasmic	170	230	0.98