YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56112035
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LLLLLSGALA VTQTCAGSHS MRYFSIAVSR PGRGEPRYME VGYVDDTQFV RFDSDAAIPR  60
   61 MEPRAPWVEQ EGPEYWDQNT RKAKARAQTD RVNLRIALGY YNQSEAGSHT IQRMYGCDVG 120
  121 PEGRLLRGYY QSAYDGKDYI VLNEDLRSWT AADMAAHITQ RKWEAANVAE QDRAYLEGTC 180
  181 VEWLRRYLEN GKETLQRADP PKTQVTHHPS SDHEATLRCW ALGFYPAEIT LTWQRDGEDQ 240
  241 TQDMELVETR PAGDGTFQKW AAVVVPSGEE QRYTCHVQHE GLPEPLTLRW EPSSQLTIPI 300
  301 VGIVAGLAVL GAVVTGAVVA AVMWRKKSSD KKGGSYSEAA SSDSAQGSDV SLMACKV

Type	Start	End	Confidence
Non-Cytoplasmic	1	297	0.98
Transmembrane Helix	298	322	0.91
Cytoplasmic	323	357	0.96