YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LYSMD3
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGRHQNRSF PLPGVQSSGQ VHAFGNCSDS DILEEDAEVY ELRSRGKEKV RRSTSRDRLD  60
   61 DIIVLTKDIQ EGDTLNAIAL QYCCTVADIK RVNNLISDQD FFALRSIKIP VKKFSSLTET 120
  121 LCPPKGRQTS RHSSVQYSSE QQEILPANDS LAYSDSAGSF LKEVDRDIEQ IVKCTDNKRE 180
  181 NLNEVVSALT AQQMRFEPDN KNTQRKDPYY GADWGIGWWT AVVIMLIVGI ITPVFYLLYY 240
  241 EILAKVDVSH HSTVDSSHLH SKITPPSQQR EMENGIVPTK GIHFSQQDDH KLYSQDSQSP 300
  301 AAQQET

Type	Start	End	Confidence
Cytoplasmic	1	214	0.64
Transmembrane Helix	215	239	0.85
Non-Cytoplasmic	240	306	0.68