YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|59858427, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPSTSVNSP AQGNGVLSSR DAARHTAGAK RYKYLRRLFR FRQMDFEFAA WQMLYLFTSP  60
   61 QRVYRNFHYR KQTKDQWARD DPAFLVLLSI WLCVSTIGFG FVLDMGFFET IKLLLWVVFI 120
  121 DCVGVGLLIS TLMWFISNKY LVKRQSRDYD VEWGYAFDVH LNAFYPLLVI LHFIQLFFIN 180
  181 PDVILTDTFI GYLVGNTLWL VAVGYYIYVT FLGYSALPFL KNTVILLYPF APLILLYGLS 240
  241 LALGWNFTHT LCSFYKYRVK

Type	Start	End	Confidence
Cytoplasmic	1	82	0.79
Transmembrane Helix	83	103	0.93
Non-Cytoplasmic	104	112	0.58
Transmembrane Helix	113	136	0.92
Cytoplasmic	137	155	0.68
Transmembrane Helix	156	179	0.81
Non-Cytoplasmic	180	188	0.64
Transmembrane Helix	189	214	0.79
Cytoplasmic	215	223	0.55
Transmembrane Helix	224	245	0.88
Non-Cytoplasmic	246	260	0.65