YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CERS4_BOVIN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWSSLNDWLW NERLWLPANI SWAQLEDHDG LVFPHPQDTL MAVPLALALV VVRFTFERFV  60
   61 ALPLSRWLGV RNQIRRPADP NATLEKHYLM KGREPTESQM NLLATQCGLT LRQTQCWFRR 120
  121 RRNQDRPCLT KKFCESSWKF VFYLCCFVCG TMVLYHESWL WTPVKCWENY PHQPLKPGLY 180
  181 HWYLLELSFY ISLLMTLPFD TKRKDFKEQV IHHFVTIILI SFSYSLNLLR IGSLVLLLHD 240
  241 SADYLLEASK LFNYMHWRRM CDTLFIIFSL VFFYTRLVLF PTRILYTTFF ESIGNFSPFF 300
  301 GYYFLNILLV ILQLLHVFWS WLILCMIYSF IKKGQMEKDV RSDVEELDSS DGEAAEECPQ 360
  361 MKNGAAQRPG AAPTDGPRSR AAGRMVNRHT PAT

Type	Start	End	Confidence
Non-Cytoplasmic	1	39	0.66
Transmembrane Helix	40	56	0.70
Cytoplasmic	57	139	0.95
Transmembrane Helix	140	159	0.93
Non-Cytoplasmic	160	178	0.95
Transmembrane Helix	179	199	0.92
Cytoplasmic	200	209	0.90
Transmembrane Helix	210	231	0.73
Non-Cytoplasmic	232	259	0.62
Transmembrane Helix	260	280	0.83
Cytoplasmic	281	283	0.61
Transmembrane Helix	284	305	0.63
Non-Cytoplasmic	306	308	0.52
Transmembrane Helix	309	331	0.81
Cytoplasmic	332	393	0.88