YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|84993243, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNICNKPSNK TAPEKNVWTA PSQDSGPSPE LQGQRSRRNG WSWPPHPLQI VAWLLYLFFA  60
   61 VIGFGVLVPL LPHHWVPAGY ACMGAIFAGH LVVHLTAVSI DPADANVRDK SYSGPLPIFN 120
  121 RSQHAHVIED LHCNLCDVDV SARSKHCSAC NKCVCGFDHH CKWLNNCVGE RNYRLFLHSV 180
  181 ASALLGVLLL VLVATYVFVE FFVNPMRLRT NQHFEVLKNH TDVWFVFLPA APVETQAPAI 240
  241 LALAALLILL GLLSTALLGH LLCFHIYLMW HKLTTYEYIV QHRPAQEAKE THKELESCPR 300
  301 KMRSIQEMEF YMRTFSHVRP EPSGQARPAA LNANPSQFLA TQGQVEPPLP SSSDTLALPP 360
  361 RIQPQEKRKR RVYRLPRSGT MDRELRLPKL RDTGTPSRHA SPSSDSTSAS PAHAGCSVDA 420
  421 YSSASAESME EIPVAQTRLG SAALGAPGAG GRESRLALQA RLPAVFVSPS SGEPGTPEAV 480
  481 KMACLSGD

Type	Start	End	Confidence
Cytoplasmic	1	46	0.96
Transmembrane Helix	47	68	0.89
Non-Cytoplasmic	69	75	0.67
Transmembrane Helix	76	98	0.87
Cytoplasmic	99	175	0.96
Transmembrane Helix	176	198	0.90
Non-Cytoplasmic	199	238	0.93
Transmembrane Helix	239	264	0.89
Cytoplasmic	265	488	0.98