YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UB2J2_BOVIN
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSNSVKRAP TTATQRLKQD YLRIKKDPVP YICAEPLPSN ILEWHYVVRG PEMTPYEGGY  60
   61 YHGKLIFPRE FPFKPPSIYM ITPNGRFKCN TRLCLSITDF HPDTWNPAWS VSTILTGLLS 120
  121 FMVEKGPTLG SIETSDFTKR QLAAQSLVFN LKDKVFCELF PEVVEEIKQK QKAQDELSSR 180
  181 PQALPLPDVV PDGETHHGQH GLPLLNGHAP GAGPHLAGLQ QANRHHGLLG GALANLFVIV 240
  241 GFAAFAYTVK YVLRSIAQE

Type	Start	End	Confidence
Non-Cytoplasmic	1	226	0.55
Transmembrane Helix	227	249	0.88
Cytoplasmic	250	259	0.50