YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SUCR1_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQNLSCENW LATEAILNKY YLSAFYAIEF IFGLLGNVTV VFGYLFCMKN WNSSNVYLFN  60
   61 LSISDFAFLC TLPILIKSYA NDKGTYGDVL CISNRYVLHT NLYTSILFLT FISMDRYLLM 120
  121 KYPFREHFLQ KKEFAILISL AVWALVTLEV LPMLTFINSV PKEEGSNCID YASSGNPEHN 180
  181 LIYSLCLTLL GFLIPLSVMC FFYYKMVVFL KRRSQQQATA LPLDKPQRLV VLAVVIFSIL 240
  241 FTPYHIMRNL RIASRLDSWP QGCTQKAIKS IYTLTRPLAF LNSAINPIFY FLMGDHYREM 300
  301 LISKFRQYFK SLTSFRT

Type	Start	End	Confidence
Non-Cytoplasmic	1	24	0.88
Transmembrane Helix	25	47	0.92
Cytoplasmic	48	55	0.84
Transmembrane Helix	56	76	0.90
Non-Cytoplasmic	77	96	0.89
Transmembrane Helix	97	119	0.84
Cytoplasmic	120	133	0.94
Transmembrane Helix	134	156	0.89
Non-Cytoplasmic	157	180	0.96
Transmembrane Helix	181	204	0.91
Cytoplasmic	205	227	0.88
Transmembrane Helix	228	247	0.91
Non-Cytoplasmic	248	317	0.70