YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|240116407
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIEHTPPTH DGETGQNHAE RPSADFDRVH SLCEILEPAF EQIENGTPLE DAPLRDKLTE  60
   61 LTVLLAELHP ADVADVLESL PPRERNIVWL LVKPEDDGEV LLEVSDAVRE TLIESMDKDE 120
  121 LLAAVDDLDA DELAELADDL PHQVVYEALQ TRDEEERAQV KAAMSYEDNQ VGAIMDFELV 180
  181 SIRADVACEV VLRYLRRFDS LPDHTDKIFV VDENDVLQGV LPIRKLLVAD PEDLVENVMA 240
  241 KDVVRFRAED DVEEAAQAFE RYDLVTAPVV DENKKLIGRI TIDEMVDVIR EESEADMLNM 300
  301 AGLQEEEDLF APVLDSVKNR WMWLAVNLCT AFLASRVIGA FEGSIEKIVA LAALMPIVAG 360
  361 IGGNSGNQTI TMIVRAMAMG QLTDMQAGRL LKKEVGVALV NGIIWGTVMG AVSWLLYGSL 420
  421 GIGLVMVAAM TLNLLLAATV GVLIPVVMEK FGRDPALGSS VLITAVTDSG GFLIFLSLAT 480
  481 LFLL

Type	Start	End	Confidence
Cytoplasmic	1	320	0.89
Transmembrane Helix	321	340	0.87
Non-Cytoplasmic	341	347	0.78
Transmembrane Helix	348	374	0.79
Cytoplasmic	375	394	0.92
Transmembrane Helix	395	417	0.91
Non-Cytoplasmic	418	423	0.77
Transmembrane Helix	424	447	0.91
Cytoplasmic	448	456	0.89
Transmembrane Helix	457	481	0.86
Non-Cytoplasmic	482	484	0.77