YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|59717441, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKAVKRLFD IIASASGLIV LSPVFLVLIY LIRKNLGSPV FFIRERPGKD GKPFKMVKFR  60
   61 SMRDALDSDG IPLPDSERLT DFGKKLRATS LDELPELWNV LKGEMSLVGP RPLLMQYLPL 120
  121 YNKFQNRRHE MKPGITGWAQ VNGRNALSWD EKFSCDVWYT DNFSFWLDMK ILFLTVKKVL 180
  181 IKEGISAQGE ATMPPFAGNR KLAVIGAGGH GKVVAELAAA LGTYGEIVFL DDRTQGSVNG 240
  241 FPVIGTTLLL ENSLSPEQFD ITVAVGNNRI RRQITENAAA LGFKLPVLIH PDATVSPSAI 300
  301 IGQGSVVMAK AVVQAGSVLK DGVIVNTAAT VDHDCLLDAF VHISPGAHLS GNTRIGEESR 360
  361 IGTGACSRQQ TTVGSGVTAG AGAVIVCDIP DGMTVAGNPA KPLTGKNPKT GTA

Type	Start	End	Confidence
Cytoplasmic	1	10	0.81
Transmembrane Helix	11	32	0.91
Non-Cytoplasmic	33	413	0.99