YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|58743493
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPKLESFR RGSMFDVSFR RSSMFDGSFR QSIRDRLLPH PTRDSFYPGE DKTPVRCCSY  60
   61 RYFSDKITGF VTKSQDVFVT AWEMGTSDPR KIIFSAKMGL ALTLVSILVF FKLPGSELSN 120
  121 HYLWAILTIV VVFEFSIGAT FSKGCNRGLG TLSAGALALG MAEISALTGQ WAEVFNSVSI 180
  181 FVVAFFGTYA KLYPTMKPYE YGFRVFLLTY CYVIVSGYRT GEFMETAVSR FLMIALGGGI 240
  241 GLLVNTCIYP IWAGDDLHNL IAKNFVNVAT SLEGCVNAYL NCVAYDTIPS KMLVYEAVTD 300
  301 DPVYSGYRSA VQSTSQEDTL MGFASWEPPH GPYRSFRYPW KAYVKVGGAL RHCAFMVMAL 360
  361 HGCILSEIQA AEDKRSVFRN ELQRVGVEGA KVLRSIGEKL KTMERLNPIE DILHEIHQAA 420
  421 EELQSKIDKK SYLLVNAETW EIGNRSKDLT DDLKNLDEDV SRILAHKSQS EATIRPPKNW 480
  481 DVVTTTSKNP NPATLATIQS QQSRTGIQVQ PSWLSRTSLT PGSMLIAPGD DEAAKMYRSA 540
  541 SALSLATFAS LLIEFVARLE NLVNAYDELC EIANFKEAVV A

Type	Start	End	Confidence
Cytoplasmic	1	92	0.99
Transmembrane Helix	93	113	0.93
Non-Cytoplasmic	114	120	0.83
Transmembrane Helix	121	141	0.92
Cytoplasmic	142	147	0.85
Transmembrane Helix	148	167	0.88
Non-Cytoplasmic	168	173	0.67
Transmembrane Helix	174	193	0.82
Cytoplasmic	194	200	0.76
Transmembrane Helix	201	221	0.81
Non-Cytoplasmic	222	230	0.61
Transmembrane Helix	231	253	0.90
Cytoplasmic	254	347	0.73
Transmembrane Helix	348	365	0.43
Non-Cytoplasmic	366	581	0.58