YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|59713443, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.59
Transmembrane Helix	5	22	0.63
Cytoplasmic	23	28	0.62
Transmembrane Helix	29	47	0.91
Non-Cytoplasmic	48	53	0.79
Transmembrane Helix	54	73	0.91
Cytoplasmic	74	84	0.87
Transmembrane Helix	85	106	0.92
Non-Cytoplasmic	107	112	0.74
Transmembrane Helix	113	133	0.93
Cytoplasmic	134	149	0.84
Transmembrane Helix	150	170	0.90
Non-Cytoplasmic	171	199	0.90
Transmembrane Helix	200	220	0.94
Cytoplasmic	221	231	0.82
Transmembrane Helix	232	252	0.85
Non-Cytoplasmic	253	255	0.52
Transmembrane Helix	256	275	0.78
Cytoplasmic	276	285	0.72
Transmembrane Helix	286	307	0.83
Non-Cytoplasmic	308	312	0.75
Transmembrane Helix	313	334	0.94
Cytoplasmic	335	343	0.79
Transmembrane Helix	344	365	0.91
Non-Cytoplasmic	366	374	0.79
Transmembrane Helix	375	396	0.87
Cytoplasmic	397	638	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGYFLQAFI YLVAAVIAVP IAKRLGLGSV LGYLIAGVVI GPIIGLVGEE TTTIQHFAEF  60
   61 GVVMMLFLVG LELEPKMLWN MRNRLMGLGG LQVVGTTAVV MGLAMFFGQS WTIALTIGLI 120
  121 FALSSTAIVL QTFNEKGLAK TEGGQNAFSV LLFQDIAVIP MLAFIPLLAL PELVAKAQLA 180
  181 AATAAEHHEE LTLVAGLPGW AYGLVITASI ALVVVGGHYL SRPLFRFVAS SGLREIFTAT 240
  241 ALMLVIGIAA LMSLVGLSPA LGTFLAGVVL ANSEFRHELE SNIDPFKGLL LGLFFITVGA 300
  301 GIDFGILFND FFLIIGLTIG VMVLKAAVLY ILALIFKIKN SNRWLFTLSL AQAGEFGFVL 360
  361 LSFTVQNHVL PQEVAQPLSL VVALSMFFTP GLFILFDKVI LPKFEQQSNE RESDTIEEKG 420
  421 TVIIAGGGRF GQVVNRFLVS NHVNTVVLDH QADQVDSLRK VNTKSYFGDA TRPDLLHTAG 480
  481 IEHAAMLVVA IDNQESSIEL VKYVKHTYPK VKILARAFDR GHSYMLRCAG ADFIESETTR 540
  541 SALEMGAEAM RNLGQHPFHV EQQKIAYKKV ENQSSDKLYQ AWLDDSEGER FDNNYRKLFI 600
  601 ELEGTIKHAM SKDRSDKHNQ SERAWTPPPK GYADDIDE