YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|59713343, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	16	0.97
Transmembrane Helix	17	39	0.91
Non-Cytoplasmic	40	72	0.93
Transmembrane Helix	73	94	0.91
Cytoplasmic	95	101	0.84
Transmembrane Helix	102	121	0.94
Non-Cytoplasmic	122	128	0.71
Transmembrane Helix	129	149	0.92
Cytoplasmic	150	155	0.88
Transmembrane Helix	156	179	0.88
Non-Cytoplasmic	180	202	0.77
Transmembrane Helix	203	224	0.73
Cytoplasmic	225	240	0.50
Transmembrane Helix	241	260	0.71
Non-Cytoplasmic	261	262	0.41
Transmembrane Helix	263	282	0.73
Cytoplasmic	283	288	0.68
Transmembrane Helix	289	307	0.89
Non-Cytoplasmic	308	316	0.75
Transmembrane Helix	317	337	0.93
Cytoplasmic	338	358	0.92
Transmembrane Helix	359	381	0.92
Non-Cytoplasmic	382	400	0.90
Transmembrane Helix	401	421	0.92
Cytoplasmic	422	433	0.77
Transmembrane Helix	434	455	0.93
Non-Cytoplasmic	456	460	0.86
Transmembrane Helix	461	479	0.95
Cytoplasmic	480	488	0.80
Transmembrane Helix	489	508	0.92
Non-Cytoplasmic	509	527	0.84
Transmembrane Helix	528	548	0.91
Cytoplasmic	549	576	0.65
Transmembrane Helix	577	603	0.84
Non-Cytoplasmic	604	615	0.55
Transmembrane Helix	616	637	0.82
Cytoplasmic	638	642	0.44
Transmembrane Helix	643	664	0.91
Non-Cytoplasmic	665	667	0.46

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVSSVLGKP KIGSSRTGLN IGIIVLMCIV LLSLLQWTAP YSQGIDLLWK TVFHYDSSDY  60
   61 QQLITYLTYL PRLSIAVLSG FGLAIAGCVM QFVLRNPIAS PTTLGVAAGA ELGMVLGILF 120
  121 LPVSSSISGF IPAFLGGAFA TGLVFLLSVK RGFSPVHMVL AGMVVSLFFG SLNTMLLLLN 180
  181 EQQLTSVFVW GAGTLNQNDW SSVSRLIPLI TFPVITILLL ARPLSALQLG DHVASSIGIN 240
  241 IKQIKVISLT LAIFITAAVV SEVGLIGFVG IVAPAIARMC GARGLPTQIL MSGSIGSVML 300
  301 LFADLIIQPF SGVGGELLPT GAMTALLGAP FLLWLLNRQQ LQSEMKVRET SQIVYRVRSL 360
  361 RFVIVPLSLL IVVLFIGAAL LGKGQLGWAV TFDISIIELR IPRVFVAFLA GVGLAIAGTV 420
  421 IQRVSMNPMA SPEILGISSG AALALVLGAV SGVAINRHEQ MLLGTLGALI VTFVIWIMGR 480
  481 KHHFAPTQML LTGIALSAGL DAFLRIALSS GQDNVKALLT WLSGSTYLVS MNDVYLLAVG 540
  541 VSLFFIFAMK SHRWLDLMGL GDTVASSVGL CCRRVRLFLL LFVAALTTLC TIIIGPLSFI 600
  601 GLLAPHMARS LHQYQASHQL IAASLLGGCL MILADWIGRV MWFPWQFPAG LLASLIGGIY 660
  661 FLYLMRK