YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|59480925, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.96
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLILVLFA LLPSMAMAAG ANVPLDKANN DISDQASLQN GAKIFMNYCA GCHSTQYQRY  60
   61 NRVAEDLGIP PDLMMENLVF NPDAKIGDLM KSAIPEKQAA NWFGAPPPDL TLVARVRGTD 120
  121 WLYTYLRTFY ADPTRPFGVN NMVFPSVGMP HVLQELQGVT TPVYETTTVD GVEHKVVVGV 180
  181 ESDGTGELSS GEYDTAVRDL VNFLEYSGDP VKLERHRLGW WVMGFLVIFA FVSYLLKKEY 240
  241 WRDVH

Type	Start	End	Confidence
Signal Peptide	1	18	0.99
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	217	0.99
Transmembrane Helix	218	236	0.93
Cytoplasmic	237	245	0.89