YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|59480818, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.53
Transmembrane Helix	12	35	0.88
Cytoplasmic	36	54	0.52
Transmembrane Helix	55	73	0.43
Non-Cytoplasmic	74	77	0.62
Transmembrane Helix	78	104	0.74
Cytoplasmic	105	140	0.83
Transmembrane Helix	141	161	0.91
Non-Cytoplasmic	162	177	0.82
Transmembrane Helix	178	197	0.95
Cytoplasmic	198	205	0.77
Transmembrane Helix	206	227	0.90
Non-Cytoplasmic	228	240	0.76
Transmembrane Helix	241	261	0.80
Cytoplasmic	262	299	0.91
Transmembrane Helix	300	320	0.90
Non-Cytoplasmic	321	346	0.90
Transmembrane Helix	347	370	0.89
Cytoplasmic	371	385	0.94
Transmembrane Helix	386	409	0.88
Non-Cytoplasmic	410	415	0.73
Transmembrane Helix	416	437	0.90
Cytoplasmic	438	477	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLINLLND LLWGSVLVYL LVAIGIYFTV RLGFIQFRHF GHMFSVLKDS RKSDTSGISS  60
   61 FQALCTSLAA RVGTGNMAGV AVALTAGGPG AIFWMWLIAM LGMATSFAES TLAQLYKTKD 120
  121 DDGNYRGGPA YYMEKGLGMR WMGVLFSVFL IIAFGLVFNA VQANSIVGAM QTAFGWKPLY 180
  181 VGVAIVILSA VVIFGGFRTI ARTAEIVVPV MALAYLAIAF FIMFTNIEKL PSVISLIFKS 240
  241 AFGLQEAAAG GLGYAIAQAM INGIKRGLFS NEAGMGSAPN AAASATPYPP HPASQGYVQM 300
  301 LGVFMDTIVI CSATVAIILM SGEYVPHGEV TGIELTQLAL TSQVGDWGGI FVAVAIFFFA 360
  361 FTSIIANYSY AETNLIFLEH NHKAGIGIFR VIVLGMVMFG ALSSLPTVWA LADVSMGLMA 420
  421 IVNLIAIALL SGTVIKLAKD YNKQLKEGKL PTFDSKDYPE LHSQLEEGIW DNTKEQK