YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|59712444, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFPIPLPNK LSALQGRGIP PIGVPVLVLS TLAMVILPIP AFLLDLMFTF NIALAMVVLL  60
   61 VTIYTRRPLD FAAFPTILLV STLLRLALNV ASTRVVLLHG HEGPGAAGHV IDAFGNVVIG 120
  121 GNYAVGLIVF IILMIINFMV VTKGAGRISE VSARFTLDAL PGKQMAIDAD LNAGLIDQDQ 180
  181 ARIRRFEVTK EADFYGSMDG ASKFVKGDAI AGILILFINI IGGLAIGMAQ FNLGFGEAIQ 240
  241 IYTLLTIGDG LVAQIPSLLL SIGAAIMVTR QNTDEDMGEQ LVFQLVDNPK ALMVTAGIMF 300
  301 VMGIVPGMPH FPFILLALLA GGWSYYLTKK KEQESEEQKA APPMELSASQ PKELSWDDVQ 360
  361 PVDVIGLEVG YRLIPMVDKE QGGELLDRVK GVRKKLSQDF GFLVPAVHIR DNLELPPNVY 420
  421 RITLMGVAGG EAEIRPDKEL AINPGQVYGS IEGEPTFDPA FGLEAVWINE EQREHAQALG 480
  481 YTVVDAATVL ATHLSQLLTN NAAQLLGHEE VQNLLELLAQ SSPKLVEGLV PDQLPLGAVV 540
  541 KVLQNLLNEA IPIRDIRTIV QTLSEYAPKS QEPDILTAAV RISLKRLIVQ EINGIEAEMP 600
  601 VITLIPELEQ ILHQTMQASG GETTGIEPGL AERLQASLTQ ATQEQELKGE AAVLLTSGVL 660
  661 RSTLAKFVKN TIPNLRVLSY QEIPDEKQIR IVQAVGN

Type	Start	End	Confidence
Cytoplasmic	1	17	0.94
Transmembrane Helix	18	39	0.89
Non-Cytoplasmic	40	45	0.65
Transmembrane Helix	46	65	0.92
Cytoplasmic	66	73	0.78
Transmembrane Helix	74	97	0.82
Non-Cytoplasmic	98	118	0.90
Transmembrane Helix	119	141	0.88
Cytoplasmic	142	209	0.96
Transmembrane Helix	210	231	0.90
Non-Cytoplasmic	232	249	0.73
Transmembrane Helix	250	269	0.83
Cytoplasmic	270	290	0.86
Transmembrane Helix	291	323	0.70
Non-Cytoplasmic	324	697	0.78