YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|59480162, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.96
Transmembrane Helix	14	33	0.92
Cytoplasmic	34	66	0.85
Transmembrane Helix	67	90	0.83
Non-Cytoplasmic	91	95	0.75
Transmembrane Helix	96	114	0.89
Cytoplasmic	115	150	0.87
Transmembrane Helix	151	170	0.92
Non-Cytoplasmic	171	184	0.83
Transmembrane Helix	185	204	0.95
Cytoplasmic	205	213	0.80
Transmembrane Helix	214	237	0.84
Non-Cytoplasmic	238	244	0.71
Transmembrane Helix	245	267	0.86
Cytoplasmic	268	308	0.91
Transmembrane Helix	309	329	0.91
Non-Cytoplasmic	330	351	0.90
Transmembrane Helix	352	375	0.90
Cytoplasmic	376	388	0.92
Transmembrane Helix	389	408	0.92
Non-Cytoplasmic	409	416	0.68
Transmembrane Helix	417	438	0.89
Cytoplasmic	439	460	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTFHNTLVT IDNFIWGPPL LILLVGTGIY FTFRLRIFQL RHLPTALKMV FSREENQSTG  60
   61 KGDVSSFAAL CTALSATIGT GNIVGVATAI KLGGPGALFW MWLAAVFGMA TKYAECLLAV 120
  121 KYRKTDSKGE MVGGPMYYLE YGMGNKWLAK LFALFALGVA CFGIGTFPQI NAIVDSAQLT 180
  181 MNAPAWLTGG ILTVLVAVVT LGGIQSIAKV AEKVVPTMAV IYVVSCASVL IMQAEALPAA 240
  241 FQLVITSAFT GTAATGGFVG ASIMLAIQSG VARGVFSNES GLGSAPMAAA AAKTDSCVKQ 300
  301 GLVSMTGTFF DTVIICTMTG LTLVVTGVWQ GDAAGALMTT QAFAIGLGSE QIGPYLVSIG 360
  361 LMFFAFTTIL GWNYYGERCV TYLFGRKGVL PYKIIFISLV ASGAYMHLDT IWVIADIVNG 420
  421 LMAIPNLIGL IALRHIIIEE THLFFSKQKE TENEQVFNRI