YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|59479662, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDYEVLRFV WWALIGVLLI GFAVTDGFDM GVGALVPVIG KTDSERRVMI NSIAPHWDGN  60
   61 QVWLITAGGA LFAAWPLVYA TSFSGFYLAM IVTLAALWFR PVGFDYRSKI EDKRWRSAWD 120
  121 AAIFIGSFVP PVIFGVAFGN LLQGVPFQLD NLMMPTYHGS FFGLLNPFAL VCGLVSSFMF 180
  181 ITQGATWLQM KTTGELHTRA RNIAMIFSAL VVVLFVIAGI WAQSIEGYVI VGSLDHFAPS 240
  241 NPLNKEVARE VGALFHNFNE YPLLWIAPAL AVIMPIVTII ASRANIGGLA FLSSSLTNAG 300
  301 VILTSGFALF PFVMPSSLNP NHSLTMWDST SSELTLTLMT YVAIVMVPII LAYTIWTYIK 360
  361 MFGRLDNKFI EENKTSLY

Type	Start	End	Confidence
Cytoplasmic	1	8	0.54
Transmembrane Helix	9	28	0.87
Non-Cytoplasmic	29	71	0.55
Transmembrane Helix	72	102	0.77
Cytoplasmic	103	118	0.91
Transmembrane Helix	119	142	0.88
Non-Cytoplasmic	143	160	0.91
Transmembrane Helix	161	182	0.92
Cytoplasmic	183	202	0.86
Transmembrane Helix	203	222	0.97
Non-Cytoplasmic	223	262	0.94
Transmembrane Helix	263	282	0.94
Cytoplasmic	283	290	0.74
Transmembrane Helix	291	314	0.85
Non-Cytoplasmic	315	335	0.90
Transmembrane Helix	336	358	0.91
Cytoplasmic	359	378	0.97