YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|197317797, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.95
Transmembrane Helix	18	42	0.84
Cytoplasmic	43	54	0.95
Transmembrane Helix	55	76	0.89
Non-Cytoplasmic	77	96	0.85
Transmembrane Helix	97	119	0.92
Cytoplasmic	120	127	0.95
Transmembrane Helix	128	148	0.95
Non-Cytoplasmic	149	188	0.92
Transmembrane Helix	189	209	0.94
Cytoplasmic	210	219	0.81
Transmembrane Helix	220	239	0.93
Non-Cytoplasmic	240	388	0.99
Transmembrane Helix	389	410	0.93
Cytoplasmic	411	421	0.87
Transmembrane Helix	422	445	0.88
Non-Cytoplasmic	446	471	0.85
Transmembrane Helix	472	493	0.87
Cytoplasmic	494	529	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITDVVELSR LQFAMTAMYH FLFVPLTLGM AFLLAIMESL YVMTDKQIYK DMTKFWGKLF  60
   61 GINFALGVAT GLTMEFQFGT NWSYYSHYVG DIFGAPLAIE ALMAFFLEST FVGLFFFGWD 120
  121 RLSKRQHLAV TWLVALGSNF SALWILVANG WMQNPVGAEF NFETMRMEMV SFAEVVLNPV 180
  181 AQVKFVHTVA SGYTCGAMFV LGISSYYLLK GRDIAFARRS FAIAASFGMA SILSVMVLGD 240
  241 ESGYELGEVQ QVKLAAIEAE WHTEEAPAAF TVIGLPNQES METDYAIKIP YVMGIIATRS 300
  301 LDKQVTGLRD LKDQHELRIR NGMVAYGLLE KLRNGEKTPE NIAAFDDVKH DLGYGLLLKR 360
  361 YTDNVVDATE DQIKAAADDS IPTVWPLFFS FRIMVACGVL MLGIFAFAFV QTCRQKIEAK 420
  421 PWLLKAALFG MPLPWIAIEA GWFVAEYGRQ PWAVGEILPV NVAASALTAT EILISMAAII 480
  481 GLYTIFLIAE VYLMVKFARK GPSSLKTGRY HFEQNGQDSE AKLTRQVEA