YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LGT_VIBF1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQGYLNFPH IDPVLIEIGP LAVRWYGLMY LFGFMFALWL ANKRADKPNS GWTRDQVSDL  60
   61 LFAGFLGVVI GGRVGYVLFY NFGYFLDNPL YLFEVWTGGM SFHGGLLGVI SAMLWYGYKN 120
  121 NRSFFTIADF VAPLVPFGLG AGRLGNFMNG ELWGRVTDVP WAMVFPTGGP FPRHPSQLYE 180
  181 FALEGVVLFL ILNWFIRKPR PLGTVSGLFL FGYGTFRFLV EYVRQPDAQL GLFGDWISMG 240
  241 QILSLPMVIG GLLMMLWAFK RNLYPSIEQP QSTTKKK

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.96
Transmembrane Helix	21	41	0.95
Cytoplasmic	42	59	0.91
Transmembrane Helix	60	80	0.93
Non-Cytoplasmic	81	95	0.87
Transmembrane Helix	96	118	0.88
Cytoplasmic	119	124	0.87
Transmembrane Helix	125	145	0.91
Non-Cytoplasmic	146	176	0.93
Transmembrane Helix	177	196	0.92
Cytoplasmic	197	201	0.90
Transmembrane Helix	202	220	0.93
Non-Cytoplasmic	221	236	0.88
Transmembrane Helix	237	259	0.90
Cytoplasmic	260	277	0.97