YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|188522864, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFHRLRDAA QHGMLAVQLC STGQEIVVTY PRIRLACLLC TLLVLAGPAG AREIGLLNVS  60
   61 YDPTREFYRD YNTAFAAHWK QQHPQDAVTV ETSHGGSGKQ ARAVIDGIEA DVVTLALAYD 120
  121 VDAIAQKAKL IDTDWEARLP DNSAPYTSTI VFLVRKGNPK NIHDWPDLLR SGVSVVTPNP 180
  181 KTSGGARWNY LAAWAYADHI FKGDRERTLR YMQALFRNVP VLDTGARGAT TTFVQRGIGD 240
  241 VLLAWENEAL LAREELGKDK FEIVVPKLSI LAEPSVALVD KNVDKHGTRE VAEAYLRYLY 300
  301 APEGQKLAAK HFYRPRHPEF ADPADMARFP DIQLVTIQQA FGSWDKAQQE HFADGGVFDQ 360
  361 IQANK

Type	Start	End	Confidence
Signal Peptide	1	51	0.65
N-region	1	42
H-region	43	48
C-region	49	51
Cleavage Site	51	52
Non-Cytoplasmic	52	365	0.99