YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|58426064, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRASHETTTS MGHDHNHAPS EIRHETPLWW ALGLTATFLL AEIIGAFVTN SLALLSDAAH  60
   61 MATDTVGLMI ALVAVRLSRR PADARRTYGY VRLEALGALA NGALLFAVGG YILWEAAQRV 120
  121 RAPQDIAYGG MLLIAGFGLV INLIAMKLLH AGSGESLNVK GAYLEVWSDM LGSMAVIIGA 180
  181 LLIHWTSWQW IDPVLAVLIG LWVLPRTWVL LREAINVLLE GVPKGIDLAQ VQQALTSHPG 240
  241 VEDVHDLHVW ALASSTPALT AHIVVNEATD RDRLRDALAT LLHDRFDIVH VTLQVESGDC 300
  301 GTEPCGTPKP AADAGHDAHH GHSHAHGHSH H

Type	Start	End	Confidence
Cytoplasmic	1	27	0.97
Transmembrane Helix	28	49	0.93
Non-Cytoplasmic	50	57	0.78
Transmembrane Helix	58	77	0.93
Cytoplasmic	78	94	0.79
Transmembrane Helix	95	114	0.92
Non-Cytoplasmic	115	125	0.88
Transmembrane Helix	126	146	0.93
Cytoplasmic	147	165	0.80
Transmembrane Helix	166	185	0.93
Non-Cytoplasmic	186	189	0.78
Transmembrane Helix	190	210	0.83
Cytoplasmic	211	331	0.94