YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|58580483, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.86
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	19	0.85
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	59	0.84
Transmembrane Helix	60	80	0.67
Cytoplasmic	81	111	0.58
Transmembrane Helix	112	131	0.86
Non-Cytoplasmic	132	138	0.71
Transmembrane Helix	139	156	0.89
Cytoplasmic	157	175	0.86
Transmembrane Helix	176	194	0.95
Non-Cytoplasmic	195	200	0.79
Transmembrane Helix	201	220	0.93
Cytoplasmic	221	227	0.75
Transmembrane Helix	228	244	0.89
Non-Cytoplasmic	245	249	0.66
Transmembrane Helix	250	268	0.83
Cytoplasmic	269	280	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISGLSPALL ACCAPCVCCT QHPGSKGGYQ DLASIRQAGM NGAAEPEFLR DVRHTAHWTP  60
   61 LHGDCAVVLL AALSCLTHLH HNPHRTRSRM SLLESIAVAI NLLGVWLTAR RIRWCWPVGI 120
  121 VAVALYAWLF YQWKLYSDML LQGVYVLTQL YGWWHWQRGS PADTRIRPLP MPVMECWLSL 180
  181 CIGAAFAASL GAYMHYRTDA ALPWLDAALA SFSLVASLWA ARKRIANWVL WIVLDCVYVG 240
  241 VFISKGLHPT AALYAGFVAL AVYGWRSWKT QQNPNLASAR