YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62734750, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATATAASRL AVAGAEPARA RRHRPTTVAV CGGARPRSRP AAVVAAAGAA APSPATGGVA  60
   61 PVPPSPRGSI IKRHTLSVFV GDESGMINRI AGVFARRGYN IESLAVGLNK DKALFTIVVS 120
  121 GTEKILKQVV EQLNKLVNVI QVDDLSKEPQ VERELMLIKL NVEPDKRPEV MGLVDIFRAK 180
  181 VVDLSDHTLT IEVTGDPGKI VAVQRNLSKF GIKEIARTGK IALRREKMGE SAPFWRFSAA 240
  241 SYPDLEVAMP SKSHVNTAMK TANQNSEESS QGDVYPVESY ENFTTNQILD AHWGVMADGD 300
  301 PTGLCSHSLS ILVNDFPGVL NVVTGVFSRR GYNIQSLAVG PAEKEGTSRI TTVVPGTDES 360
  361 IAKLVHQLYK LIDVYEVQDL THLPFAAREL MIIKIAVNTT ARRAILDIAD IFRAKTVDVS 420
  421 DHTVTLQLTG DLDKMVALQR MLEPYGICEV ARTGRVALRR ESGVDSKYLR GFSLPL

Type	Start	End	Confidence
Signal Peptide	1	20	0.89
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	476	0.98