YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77548658, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	780	0.92
Transmembrane Helix	781	798	0.60
Cytoplasmic	799	807	0.51
Transmembrane Helix	808	830	0.82
Non-Cytoplasmic	831	840	0.56
Transmembrane Helix	841	861	0.86
Cytoplasmic	862	868	0.56
Transmembrane Helix	869	890	0.86
Non-Cytoplasmic	891	898	0.43
Transmembrane Helix	899	915	0.54
Cytoplasmic	916	936	0.92
Transmembrane Helix	937	957	0.92
Non-Cytoplasmic	958	972	0.82
Transmembrane Helix	973	993	0.93
Cytoplasmic	994	999	0.86
Transmembrane Helix	1000	1020	0.92
Non-Cytoplasmic	1021	1026	0.66
Transmembrane Helix	1027	1047	0.70
Cytoplasmic	1048	1061	0.70
Transmembrane Helix	1062	1085	0.75
Non-Cytoplasmic	1086	1094	0.75
Transmembrane Helix	1095	1115	0.93
Cytoplasmic	1116	1143	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQVRSAPEL DSRRRRRDSD DESGERDLDT RRHRRRSPSS ESCSSSGDDD RSRRHRHDES  60
   61 SRRRQRDQSH RRDRGGHDER RRRSPQRRKE PTPPPPLLPE MIPGRTGGIY IPPFRMAQMM 120
  121 REVEDKSSAE YQRLSWDALK KSINGLVNKV NATNVKNIVP ELFAENLVRG RGLFCQSCIK 180
  181 SQMASPGFTD VFAALVAIVN TKFPEIGRLL LVRVVLQLKR AYKRNDKVTF LNSPFQLDMQ 240
  241 VIAHELVALE LLTVLLENPT DDSVEVHILF LMSFYVDHVF IYAISEAYGY VSYLDLSPQG 300
  301 LHAIFERFRG ILQEGEIDKR VQFLIEGLFA IRKAKFQGFP AIRPELDLVE QEDQFTHEIS 360
  361 LEDELDPETN LNVFRGNPNF AEDEKAYENL KRSILGAESS DDEEGSDDSS DEDAEEESDD 420
  421 EEDEEQMEIR DQTETNLINL RRTIYSTIMS SVDFEEAGHK LLKIKLEPGQ EMELCIMLLE 480
  481 CCSQERTYLR YYGLLGQRFC MINKVYQDNF EKCFVQQYSM IHRLETNKLR NVAKFFAHLL 540
  541 GTDALPWHVL AYIRLTEEDT TSSSRIFIKI LFQELSEHLG IRLLNERLND PNMQDSFDSI 600
  601 FPKDHPKNTR FSINFFTSIG LGGITETLRE YLKNMPRLIM QKQKPASSES DSSDSGSGSD 660
  661 SYSSESESSS DESDRKRNKR RKKCRRGGDK VNMEEKVGGD VRVLKPLMHL LLGLVMYWVA 720
  721 EEMTVPVLVD VTTRALCPGA DIACPEAIYL TGLHQTVGGI FRAVGYTLMG QLADEYGRKP 780
  781 LLLLTASTSI IPYGVLACNK SKIAVYIFLI LRTLSFMIGQ GTITSLAVTY TADVVDPSKR 840
  841 AFAFGCITGI LSASHALGNG FSRFLPERWI FQVSVALLIS SVIYMKISLV ETLQRASSGS 900
  901 FEHMSFSSLV VRLPLRRWES IKENINIIRR SETLSRITYI SFFYELGMIG ISDVLMYYLK 960
  961 SVFGFDKNQF SEILMVVGIG SIFSQILVLP VIINTVGEKG VLCVGILASV AYAVLYGLAW1020
 1021 SYWVPYLTSS LGVIYVLVKP ATYAIISGEV DSSDQGKAQG FISTVKSTAV LLAPLFMSPL1080
 1081 TSYFISEQAP FNCKGFSFLV AGFFLAISLG ISFMLKPEAK CTRVAVPDQL DHEAVQAPLL1140
 1141 AQP