YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	JAGN1_XENLA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRAGPRAT GSDGSDFQHR EKVAGHYKMS ASLKNEIKKL IYAHLIIWML IAAQMCVSHL  60
   61 KLVSKDLVAM PYQWEYPYLL SLVPSLFGLF SFPRNNISYL VISMISTGLF SIGPLIYGTL 120
  121 EMFPMAQQLY RHGKAYRFIF GFSAISVMYL VMVVAVQVHG WQIYYSKKLL DSWFTNTQEK 180
  181 KKK

Type	Start	End	Confidence
Cytoplasmic	1	39	0.92
Transmembrane Helix	40	63	0.87
Non-Cytoplasmic	64	73	0.85
Transmembrane Helix	74	92	0.55
Cytoplasmic	93	96	0.45
Transmembrane Helix	97	120	0.87
Non-Cytoplasmic	121	137	0.48
Transmembrane Helix	138	161	0.88
Cytoplasmic	162	183	0.51