YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56789412, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTQSHRYRD IERAAVYLQP EKCVPPPVRD SMDKVWFIKD GCGIACAVVT WLLVFYAEFV  60
   61 VIFIMLLPSK DVIYSIVNGI VFNILAFMAL ASHFRAMITD PGAVPKGNAT KEFIESLQLK 120
  121 PGQVVYKCPK CCSIKPDRAH HCSVCKRCIR KMDHHCPWVN NCVGENNQKF FVLFTMYIAL 180
  181 ISLHALIMVA LHFLYCFEED WTKCSSFSPP TTVILLILLC FEGLLFLIFT AVMFGTQVHS 240
  241 ICTDETGIEQ LKKEERRWAK KTKWMNLKAV FGHPFSIAWL SPLATPDQGK ADPYQYVV

Type	Start	End	Confidence
Cytoplasmic	1	40	0.93
Transmembrane Helix	41	65	0.82
Non-Cytoplasmic	66	71	0.83
Transmembrane Helix	72	94	0.88
Cytoplasmic	95	172	0.94
Transmembrane Helix	173	195	0.91
Non-Cytoplasmic	196	211	0.88
Transmembrane Helix	212	234	0.89
Cytoplasmic	235	263	0.92
Transmembrane Helix	264	284	0.64
Non-Cytoplasmic	285	298	0.68