YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|147904527, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSPELLLDS SIRLWVVLPI VFITFLTGLL RHHITRLLQG DKRPELEALS DSQVLIRSRI  60
   61 LRENGKYIPR QSFIMRKFYF NDKETGFFKK TKRKVIQKNP MTDPTMMTDM MKGNLTNVLP 120
  121 MILIGGWINW AFSGFLTTKV PFPLTLRFKP MLQRGIDLVS LDASWVSSAS WYFLNVFGLR 180
  181 SMYTLILGQD NAADQSRIMQ DQMTGAALSV PPDTNKAFKA EWEAMEITEH HWALDSIEED 240
  241 LIAQDLAFAR GQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.82
Transmembrane Helix	12	34	0.87
Cytoplasmic	35	114	0.85
Transmembrane Helix	115	136	0.86
Non-Cytoplasmic	137	160	0.77
Transmembrane Helix	161	179	0.57
Cytoplasmic	180	252	0.67