YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LETM2_RAT
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFYSYNSFL AIFWTRLPGH SVHPPCSHFP PLAFFHLPDS HLRTAYMKNC GSRKYSYPGL  60
   61 TGNNKVHPLR TRLPQKLHTT CWLQNHPGKP QPEQIPEEPK ATDPQPTKDD QTEVAEGKWS 120
  121 LRQKIIDEVK YYYNGFSLLW IDTKVAARIV WRLLHGQVLT RRERRRLLRT CADVFRLVPF 180
  181 VVFIIVPFME FLIPVFLKLF PDMLPSTFES ESKKEEKQKK MMGAKLEIAK FLQETMTEMA 240
  241 KRNRAKLDDD SSDSSQLSSY VKQVQTGHKP STKEIVRFSK LFEDQLALEH LRRPQLVALC 300
  301 KLLELQAFGT NNLLRFQLLM TLRSIKADDE VIAKEGVKAL SVSELQAACR ARGMRSLGLT 360
  361 EEQLRQQLTE WLDLHLKENV PPSLLLLSRT FYLIDVKPKP IELPPSIETP KTNLGIPSSP 420
  421 PPESKEDITD PAPQLNGTKI LQAKSQETSQ NSKANSKGA

Type	Start	End	Confidence
Cytoplasmic	1	173	0.91
Transmembrane Helix	174	196	0.86
Non-Cytoplasmic	197	459	0.99