YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67678296, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLLLQLVG LGVALAAAAL ILVSIVAFIT ATKMPPCHRH EEEKFFLNAR GQKEALPSIW  60
   61 DSPTKQLSVV VPSYNEEKRL PVMMDEALNY LEKRQKHDRT FTYEVIVVDD GSEDQTSKVA 120
  121 LKYCQKYGSD KVRVITLVQN RGKGGAVRMG VFSSRGEKIL MADADGATKF PDVEKLEKGL 180
  181 SDLQPWPEQM AIACGSRAHL EKESIAQRSY FRTLLMYGFH FLVWFLCVKG IRDTQCGFKL 240
  241 LTREAAARTF SSLHIERWAF DVELLYIAQF LQIPIAEVAV NWTEIEGSKL VPFWSWLQMG 300
  301 KDLLFIRLRY LTGAWRLEQT RKVS

Type	Start	End	Confidence
Signal Peptide	1	27	0.85
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	324	0.91